Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
2BTM Chain:A ((1-248))
-RKPIIAGNWKMNGTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPEQVKQAVIAYEPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVGGASLEPASFLQLVEA--
General information:
TITO was launched using:
RESULT:
Template:
2BTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115584 for 2197 contacts (-52.6/contact) +
2D Compatibility (PS) -27193 + (NN) -12865 + (LL) 464
1D Compatibility (HY) -26000 + (ID) 8100
Total energy: -189278.0 ( -86.15 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2BTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BTM-query.scw
PDB file :
Tito_Scwrl_2BTM.pdb
: