Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKQVALYIAVSLDGYIADENGSVEWLES--IDSEGDAGYEAFFDNVDTVVMGRTTYQQIFSL--TDTFPYSKKDVYVFSNTKAGTKDEYADFVAGTVD--TWLNNIDGEKIWLVGGAKLVQQFLKERAIDRFVITIAPIILGKGIPLFEEDQEHALELEEVTRFGQFAQLTYKNLEEN
3JTW Chain:A ((4-157))
---RKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYADRQTYIVTSHLGEDTDKIKYWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRLFDRLEEQV-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3JTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92032 for 1001 contacts (-91.9/contact) +
2D Compatibility (PS) -15963 + (NN) -5375 + (LL) 2376
1D Compatibility (HY) -15600 + (ID) 2600
Total energy: -129194.0 ( -129.06 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3JTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JTW-query.scw
PDB file :
Tito_Scwrl_3JTW.pdb
: