Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQIIDDVNGVTLASASNLDKDFGSAESKVD--AASKVGELVAKRASEKGITSVTFDRGGYLYHGRVKALAEAARENGLEF
3J3V Chain:O ((1-120))
MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDL-NVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLKF
General information:
TITO was launched using:
RESULT:
Template:
3J3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 35436 for 874 contacts (40.5/contact) +
2D Compatibility (PS) -12528 + (NN) -2755 + (LL) -172
1D Compatibility (HY) -10400 + (ID) 4650
Total energy: 4931.0 ( 5.64 by residue)
QMean score : 0.207
(partial model without unconserved sides chains):
PDB file :
Tito_3J3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J3V-query.scw
PDB file :
Tito_Scwrl_3J3V.pdb
: