Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETKKTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDADYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAAQKADTTTISINNLAKMEDGTYKLEEQNYA-HGYRVVFSMDVKDGKITKSDYNYVDKD-GKLKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAAQLQNAAQNGNTDTIKVYNLVEAE |
3O6U Chain:A ((29-146)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LKDGDYTVETAKADDHGYKAKLSIKVSDGKITEAKYNEFNGETNAMKREDKDYNEKMTGVSGIGPAEYEPQLEKALIEKQS-SDIDVITGATSSSNQFKKLAEKVLKNAEEGKTEATLV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3O6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 36370 for 841 contacts (43.2/contact) +
2D Compatibility (PS) -11925 + (NN) 694 + (LL) 10512
1D Compatibility (HY) 2000 + (ID) 1200
Total energy: 36451.0 ( 43.34 by residue)
QMean score : 0.224
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