Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK
3DEG Chain:D ((2-122))
--TVNQLVRKPRARKVAKSNVPALEA-------------CPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPK-
General information:
TITO was launched using:
RESULT:
Template:
3DEG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27102 for 790 contacts (-34.3/contact) +
2D Compatibility (PS) -13185 + (NN) -9629 + (LL) 692
1D Compatibility (HY) -10400 + (ID) 4600
Total energy: -64224.0 ( -81.30 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3DEG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DEG-query.scw
PDB file :
Tito_Scwrl_3DEG.pdb
: