Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPNIKEIAKLAGVSVTTVSRVLNNHPYVAEEKRVRVQAVIDELDYSPNRSAMDLARGKTNTVGVIIPYNDHPWFDKIVNGILEVAFKNRYSVTLFPTGYDPKEEEKYLMRLKTKQVDGLIITSR--ANNWDVILPYLAYGPIIACEYVESK-EVSCSYIDRVKAYRAGF---QFLEDEGYKKVAFTAGRASRESTS--TYGKINAYEQVFGPVGDNRFLSECYTLEDGLKAGEHFFAAGKDWPDAIYANGDEVAAGVMYHVKKLGLRVPEDVAILGQENLPIGKVL--EITTLDHNLKKLGENAFTIF------EQGKLQRIKVEHELIRRKTV |
| 1BDH Chain:A ((2-330)) | --TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLAVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID--NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHR-PTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BDH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135735 for 2536 contacts (-53.5/contact) +
2D Compatibility (PS) -33951 + (NN) -15135 + (LL) 516
1D Compatibility (HY) -22800 + (ID) 4550
Total energy: -211655.0 ( -83.46 by residue)
QMean score : 0.453
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