Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP----EYMLSHTCLVREPEKFYQFVTENMY-YPNAVPNVIHKKMAEIETEKDV-TIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGMTVTAKDYLK----SDIHT--DCGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKERISLPYPFEMMESDAVKVFEEI
1YC5 Chain:A ((3-199))
MKEFLDLLNESRLTVTLTGAGISTPSGIPDF-----------QNVFDIDFFYSH------PEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAEL--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98476 for 1284 contacts (-76.7/contact) +
2D Compatibility (PS) -19434 + (NN) -9852 + (LL) 4256
1D Compatibility (HY) -17600 + (ID) 3400
Total energy: -144506.0 ( -112.54 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_1YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YC5-query.scw
PDB file :
Tito_Scwrl_1YC5.pdb
: