Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNELEDKILAILEQHQVGVLTSVQGDYPHARYMTFLHDGLTLYTPSGKELPKTDEVRRNPHVSVLIGYESPGSAFLEINGLASLEEDESIKERIWENISKEWFRGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG
3DB0 Chain:A ((3-126))
--NELEDKILAILEQHQVGVLTSVQGDFPHARYMTFLHDGLTLYTPS----PKTEEVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDESIKERIWENISKDWFQ------FVVIKIVPEQIRILN-------------
General information:
TITO was launched using:
RESULT:
Template:
3DB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37118 for 703 contacts (-52.8/contact) +
2D Compatibility (PS) -12819 + (NN) -6973 + (LL) -52
1D Compatibility (HY) -2000 + (ID) 1650
Total energy: -60612.0 ( -86.22 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3DB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DB0-query.scw
PDB file :
Tito_Scwrl_3DB0.pdb
: