Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VILIIDHNDSFTYNLYQYFLELQEEVQVVSATSFSLEAFQQLAPEMVVLSPGPGSP---EDFPVSLAL---LGKIQVPILGICLGHQIIGHFFGAKVVPANVPVHGKTS---VISHTGEGLFADLEPAFQVTRYHSLVIDPTTVPVNLKVTAVT-EDGVIMGLVHATKPIHSVQFHPEAILSENGHAILKNFVRLGRNVK
1QDL Chain:B ((5-192))
--LIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGK-RTPILGVCLGHQAIGYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRP--LIVDAISAEDNEIMAIHHEEYPIYGVQFHPESVGTSLGYKILYNFL-------
General information:
TITO was launched using:
RESULT:
Template:
1QDL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145266 for 1538 contacts (-94.5/contact) +
2D Compatibility (PS) -19182 + (NN) -6000 + (LL) 1092
1D Compatibility (HY) -16800 + (ID) 4050
Total energy: -190206.0 ( -123.67 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_1QDL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QDL-query.scw
PDB file :
Tito_Scwrl_1QDL.pdb
: