Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
1Y0E Chain:A ((6-219))
-----------GLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRP-KETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQ-----------
General information:
TITO was launched using:
RESULT:
Template:
1Y0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135737 for 1842 contacts (-73.7/contact) +
2D Compatibility (PS) -23525 + (NN) -13397 + (LL) 1636
1D Compatibility (HY) -21600 + (ID) 6050
Total energy: -198673.0 ( -107.86 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0E-query.scw
PDB file :
Tito_Scwrl_1Y0E.pdb
: