Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTALKGVVFDLDGVITDTAHYHYLAWKKTAESIGIEFDEAFNENLKGVSRIDSLLLILRKDGRENDFTEEQIEALAADKNDFYVSLLKEITPADVLPGIKELIVDLKKQNLKCAIASVSKNARTVLSALEMEQEFDYIVDAAKITKSKPDPEIFVEACRGLGLETSEVVGIEDAQAGIEAINAAGIVSVGVGSGLRDADMTVKSTGLLDLRILEILHSK
4G9B Chain:A ((2-206))
-VMKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPST--------------
General information:
TITO was launched using:
RESULT:
Template:
4G9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113417 for 1623 contacts (-69.9/contact) +
2D Compatibility (PS) -22363 + (NN) -13327 + (LL) 1532
1D Compatibility (HY) -20800 + (ID) 5350
Total energy: -173725.0 ( -107.04 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_4G9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G9B-query.scw
PDB file :
Tito_Scwrl_4G9B.pdb
: