Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKPNVVQLNNQYINDENLKKRYEAEELRRKNRLM--GWVLIFVMLLFILPTYNLVKSYRTLQERRQEVVKLTKDYQTLTNRTENQKLLAKQLKNPDYVQKYARAKYYFSKTGEMIYPLPDLLPK
2XN6 Chain:A ((247-308))
----------------ESVEAAMSSKTLKKWNRLLQKGWVDLFVPKFSISATYDLGATL--LKMGIQHAYSENADFSGLTEDNGLKLSNAAHKAVLHIGEKGTEAAGAMFLEAIPRS--------
General information:
TITO was launched using:
RESULT:
Template:
2XN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4749 for 193 contacts (24.6/contact) +
2D Compatibility (PS) -6423 + (NN) 299 + (LL) 1412
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -5313.0 ( -27.53 by residue)
QMean score : 0.210
(partial model without unconserved sides chains):
PDB file :
Tito_2XN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XN6-query.scw
PDB file :
Tito_Scwrl_2XN6.pdb
: