Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKVLTFLLCSLYFVSIPAISTEEPLTLSQNRRYALTQTVVDKEMYFDAIPERPTTKIEISSFQDEALTITGETLVPNTLLSIVSLTINSNGIPVFTLSNGQFIKASREAIFNDLVSKQQSVSLDYWLKPSFVTYEAPYTNGVSEVKNNLKPYSRVHLVEQAETEHGIYYKTDSGFWISVEDLSVADNRMAKVQEVLLEKYNKDKYGIYIKQLNTQTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSGKLEKKADHKLYTVKELLEATAKESDNVATNML-----GYYVNNQYDSMFQTQVDTISGMHWDMKK-RQISPQAAGKMM------EAIYYQNGDIVNYLSKTDFDNTRIPKNI--PVKVAHKIGDAYDYKHDAAIV-------YAEQPFIMIIFTDKSSYDDITKIADDVYQVLK |
| 2J9O Chain:A ((37-272)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GLYFFNLDSGASLNVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQERLTMR------PDLIAPE-AGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRLGGAAELNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLMLKIGQGEILSPRSRDRLLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSELIRQVSRMVYQAFE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2J9O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -18394 for 1874 contacts (-9.8/contact) +
2D Compatibility (PS) -22474 + (NN) -44 + (LL) 15148
1D Compatibility (HY) -5600 + (ID) 2750
Total energy: -34114.0 ( -18.20 by residue)
QMean score : 0.275
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