Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYDHLLNLTHYKDINPNLDLAI--------DYLLSHDLRNLDIGTYHISPEVILMVQSNQLSESFDHIFEYHKKYLDIHYVIEGHEVIKLGKG--DKVEVEEYLGDIGFIKCS---EETSFDLRDNYIAFFFPEEAHQPNGMGSLGNYVKKGVLKVLMA
1JOP Chain:A ((8-132))
---------------NPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEP--------KAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVIKKLVVKVPVKLI----
General information:
TITO was launched using:
RESULT:
Template:
1JOP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42052 for 567 contacts (-74.2/contact) +
2D Compatibility (PS) -11153 + (NN) -3063 + (LL) 1528
1D Compatibility (HY) -8400 + (ID) 1550
Total energy: -64690.0 ( -114.09 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1JOP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JOP-query.scw
PDB file :
Tito_Scwrl_1JOP.pdb
: