Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIYDQIESALDLMTDLEREIACYFMGQPISKDALASTIVTKQLHISQAALTRFAKKCGFKGYREFVFEY-LKSHETISQQLYGLQNDNTKKVFMNYQEMVSKSADIIDEEQLLEVSHMIEQADRVYFYGKGSSSLVAKEFKIRLMRLGVICEALDDTDSFSWTNSIVNDRCLVIAFSLSGNTNSVIGALKIASSHGAKTVLFTKQPHTIDYAFDKIIQVASARHLDY-GNRISPQIPMLIMVDIIYAQFLDINKIEKERIFRETIIQR
4IVN Chain:A ((42-256))
-------------------------------------TDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVDLSQT---------GDICDVSAQSAVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARPEGPLTGGAFASKVGALLLVDVLVNSLLESYPEYKDSVQETAEVVI
General information:
TITO was launched using:
RESULT:
Template:
4IVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124021 for 1651 contacts (-75.1/contact) +
2D Compatibility (PS) -22404 + (NN) -11012 + (LL) 4020
1D Compatibility (HY) -10000 + (ID) 2450
Total energy: -165867.0 ( -100.46 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4IVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IVN-query.scw
PDB file :
Tito_Scwrl_4IVN.pdb
: