Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVCFVCLGNICRSPMAEFVMANLDKEDSLSVESRATST----WEHGNPIHRGTQAILQRYQIPYINDKGSQPISKDDLAYFDYIIGMDEQNVKDLKALSQGTYDDKISLFCD-------GGVPDPWYTGDFEETYRLVNDGCKQWLTLINNSRD
4ETM Chain:A ((18-171))
MISVLFVCLGNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQEILRREGISF-DGMLARQVSEQDLDDFDYIIAMDAENIGSLRSMAGFKNTSHIKRLLDYVEDSDLADVPDPYYTGNFEEVCQLIKTGCEQLLASIQKEKQ
General information:
TITO was launched using:
RESULT:
Template:
4ETM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75634 for 1159 contacts (-65.3/contact) +
2D Compatibility (PS) -15739 + (NN) -6810 + (LL) 204
1D Compatibility (HY) -14000 + (ID) 3100
Total energy: -115079.0 ( -99.29 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_4ETM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ETM-query.scw
PDB file :
Tito_Scwrl_4ETM.pdb
: