Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKPTRKRRVKKNIESGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSRKSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKGPGSGRESAIRALAAAGLEVTAIRDVTPVPHNGARPPKRRRV
4ADV Chain:K ((12-128))
----------RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV
General information:
TITO was launched using:
RESULT:
Template:
4ADV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36612 for 866 contacts (-42.3/contact) +
2D Compatibility (PS) -13015 + (NN) -8341 + (LL) 884
1D Compatibility (HY) -8400 + (ID) 3950
Total energy: -69434.0 ( -80.18 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_4ADV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADV-query.scw
PDB file :
Tito_Scwrl_4ADV.pdb
: