Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKYVKWLIPISIIGMLLAGCQMNSESKSQSNEVKNSKHSAVKKDKKMTKKEQLVYLNEHEQ
3SN6 Chain:A ((9-41))
--------------------------TEDQRNEEK-AQREANKKIEKQLQKDKQVYRATHRL
General information:
TITO was launched using:
RESULT:
Template:
3SN6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13806 for 124 contacts (111.3/contact) +
2D Compatibility (PS) -3543 + (NN) -2630 + (LL) 2324
1D Compatibility (HY) 1200 + (ID) 600
Total energy: 10557.0 ( 85.14 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_3SN6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SN6-query.scw
PDB file :
Tito_Scwrl_3SN6.pdb
: