Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLEKFIDHLNVEEVLFTFFTKLISILLLIIAFVIVR--QVINYLFEKTVNRS-LAFSRQKVARQKTLAKLSHNVLNYTLYFFLFYWILSILGVPISSLLAGAGIAGVAIGLGAQGFLSDVVNGFFILLENQFDVGDIINVGTVSGTVTNVGIRTTQIHDFDGTLHFIPNRNITIVSNKSRSNMRAQIDIPLFVHTNLDQISDIVTKINEEYVSKHPAIVGEPTVFGPTTNANGQFVYRINIFTQNGAQFDIYAEFYKLYQKAILEEGIDLPTYNFSNNHSR
3UDC Chain:A ((27-278))
----------------------------ILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKI---DTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPNGEIKMVTNLTKDSMMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSRDDLIEGPTVLGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISFPYPQMDVNFKR
General information:
TITO was launched using:
RESULT:
Template:
3UDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112382 for 1571 contacts (-71.5/contact) +
2D Compatibility (PS) -26612 + (NN) -14391 + (LL) 3636
1D Compatibility (HY) -28000 + (ID) 4050
Total energy: -181799.0 ( -115.72 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3UDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UDC-query.scw
PDB file :
Tito_Scwrl_3UDC.pdb
: