Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSKENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGWND-RENII---KWTEMIVDKNPSSQITLFGVSMGGATVMMASGEKLPSQVVNIIEDCGYSSVWDELKFQAKEMYGL---PAFP-----------------LLYEVSTISKIRAGFSYGQASSVEQLKKNNLPALFIHGDKDNFVPT---SMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK |
| 4FBM Chain:A ((53-281)) | -------------------------------------------------------------------------------------------LVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMAASTASDWTADIVAAMRWLEERCD-----VLFMTGLSMGGALTVWAAGQ-FPERFAGIM------PINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPVPAIKHLITIGAVAEM-LLPRVKCPALIIQSREDHVVPPHNGELIYNGIGST--EKELLWLENSYHVATLDNDKELILERSLAFIRKHSK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4FBM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -78820 for 1701 contacts (-46.3/contact) +
2D Compatibility (PS) -21001 + (NN) -2885 + (LL) 7860
1D Compatibility (HY) -13600 + (ID) 2800
Total energy: -111246.0 ( -65.40 by residue)
QMean score : 0.352
|
|
|