Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTYFDNFLKTNQAYADLHGTAHLPIKPKTKVAIVTCMDSRLHVAQALGLDLGDAHILRNAGGRVTDDVLRSLVISQQQLGTREIVVLHHTDCGAQTFTNEAFATQLQRDLGVDMHGHDFLPFNDIEESVREDVAKLHASPLIPNDVVISGAIYDVDTGRMVEVK
3LAS Chain:A ((4-166))
--SYFDNFIKANQAYVDLHGTAHLPLKPKTRVAIVTCMDSRLHVAPALGLALGDAHILRNAGGRVTDDVIRSLVISEQQLGTSEIVVLHHTDCGAQTFTNAEFTEQLKRDLAVDAGDQDFLPFTDIEESVREDIALLKNSPLIPEDIIISGAIYDVDTGRVREVN
General information:
TITO was launched using:
RESULT:
Template:
3LAS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98577 for 1131 contacts (-87.2/contact) +
2D Compatibility (PS) -17918 + (NN) -9961 + (LL) 260
1D Compatibility (HY) -20800 + (ID) 6550
Total energy: -153546.0 ( -135.76 by residue)
QMean score : 0.656
(partial model without unconserved sides chains):
PDB file :
Tito_3LAS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAS-query.scw
PDB file :
Tito_Scwrl_3LAS.pdb
: