Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKYILKRVAILLVTLWVVITLSFFLMQILPGTPYNNPKLTEEMIALLNKQYGLDKPVWQQYLTYLWNVLHGDFGTSYQSVNQPVSRMISLRLGVSVHLGVQALVFGVLGGILVGAISARHKNDKVDGILSVIATLGISMPSFIIGILLLDYFGFKWNLLPLSGWGTFSQTILPSLALGLPTLASVSRFFRSEMIETLNSDYVQLARSKGMTIRQVTRKHAYRNSMIPILTLIGPLAAGLLTGSALIEQIFSIPG----IGQQFVT------SIPTKDYPVIMGTTIVYAVMLMVAILITDVVISIVDPRVRLQ |
4P84 Chain:A ((28-107)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKPVPVGEIDITLYRDDLSVTSNDEPLVKGTDIPVDITDKKVILVDDVLYTGRTVRAGMD |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P84.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46927 for 397 contacts (-118.2/contact) +
2D Compatibility (PS) -7712 + (NN) 27 + (LL) 17356
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -41556.0 ( -104.68 by residue)
QMean score : 0.183
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