Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIKLTPEELRISAKKYTTGSQSITDVLTVLTQEQAVIDENWDGTAFDSFEAQFNELSPKITQFAQLLEDINQQLLKVADVVEQTDSDIASQINK
3GVM Chain:A ((2-95))
MSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIASQI--
General information:
TITO was launched using:
RESULT:
Template:
3GVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12690 for 524 contacts (-24.2/contact) +
2D Compatibility (PS) -9793 + (NN) 46 + (LL) -16
1D Compatibility (HY) -11200 + (ID) 4000
Total energy: -37653.0 ( -71.86 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3GVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVM-query.scw
PDB file :
Tito_Scwrl_3GVM.pdb
: