Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHIKEVSKKTGITSDTIRYYERINLIPPIHRSESGIREFTQNDIDILEFVRYFRGAGVSVESLIDYIHLVEKGDSTIPARLEILKDERDNLEDRLQGLQEALNRLNHKIDNYQNKVVPREQELFDPTTK
3GP4 Chain:A ((3-127))
LNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVE
General information:
TITO was launched using:
RESULT:
Template:
3GP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38212 for 746 contacts (-51.2/contact) +
2D Compatibility (PS) -13444 + (NN) -4114 + (LL) 0
1D Compatibility (HY) -13200 + (ID) 3250
Total energy: -72220.0 ( -96.81 by residue)
QMean score : 0.679
(partial model without unconserved sides chains):
PDB file :
Tito_3GP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GP4-query.scw
PDB file :
Tito_Scwrl_3GP4.pdb
: