Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAVDLLEGLTANKQDVLKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
1SZP Chain:A ((9-55))
-------------------------------------------------VNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVP
General information:
TITO was launched using:
RESULT:
Template:
1SZP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22408 for 274 contacts (-81.8/contact) +
2D Compatibility (PS) -5162 + (NN) -1135 + (LL) 3600
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -28305.0 ( -103.30 by residue)
QMean score : 0.837
(partial model without unconserved sides chains):
PDB file :
Tito_1SZP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SZP-query.scw
PDB file :
Tito_Scwrl_1SZP.pdb
: