Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDVVEKQTAKSFIMNVLNGLALGTVIVLIPGAILGELMKALLPMWSGFATLIAATAVATSMMGLVIGIMVGLNFKFNPIQSASLGLAVMFAGGAATFLKGAIMLKGTGDIINMGITAALGVLLIQFLSDKTKSFTLIVIPTVTLLLVGGVGHVLLPYVKMITTMIGQGIASLLGLQPVLMSILIAMIFCFLIVSPITTVGIALAISLSGIGSGAANLGICAASFGLCMAGWSVNSKGTALAHVLGSPKISMANVLAKPKIMLPMISSAAILGILGALFNIQGTPASAGFGISGLIGPINALNLAKGGWSVMNMLLIIIIFVAAPIILNFIFNYLFIKVLKIIDPMDYKLDI |
| 1VJI Chain:A ((230-345)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRVGIRLSPFADYMESGDTNPG----ALGLYMAE-SLNKYGILYCHVIEARM----------HTLMPMRKAFKGTFISAGGFTREDGNEAVSKGRTDLV--------AYGRWFLANPDLPKRFQVDAPLNKYDRPTFYTSDPVVGYTDYPFLE-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VJI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77067 for 700 contacts (-110.1/contact) +
2D Compatibility (PS) -10750 + (NN) 464 + (LL) 19528
1D Compatibility (HY) -2400 + (ID) 1550
Total energy: -71775.0 ( -102.54 by residue)
QMean score : 0.111
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