Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSSFYKQRKGKLVCGVVAGLADKYNWDLALSRVLIALILYF--TKFGLLLYILLAVFLPYKEDIIETRRQGPRRRKDAEPVDDDGWFW
3SWR Chain:A ((323-369))
--------------------------------------VLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPE
General information:
TITO was launched using:
RESULT:
Template:
3SWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7511 for 124 contacts (-60.6/contact) +
2D Compatibility (PS) -4551 + (NN) 2937 + (LL) 3148
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -9577.0 ( -77.23 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_3SWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SWR-query.scw
PDB file :
Tito_Scwrl_3SWR.pdb
: