Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQENIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENAPEAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQTL-DKSYDFVFMDSAKS---KYIVFLPQVLKHLDVGGVVVLDDIFQGGDIAKPIDEVR-RGQRTIYRGLQRLFDSTLRHPDLTATLVPLGDGLLMIRKNAEHIVLED
3NTV Chain:A ((32-227))
-------------------------LHQHQ---NSSIEVLREFAEVNEVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAAKAQSKKFFEIYTPLLKH---QGLVITDNVLYHGFVS-DIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIKG--------
General information:
TITO was launched using:
RESULT:
Template:
3NTV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121448 for 1478 contacts (-82.2/contact) +
2D Compatibility (PS) -21048 + (NN) -13634 + (LL) 3344
1D Compatibility (HY) -20400 + (ID) 3400
Total energy: -176586.0 ( -119.48 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_3NTV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NTV-query.scw
PDB file :
Tito_Scwrl_3NTV.pdb
: