Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSMDWETFLDPYIQTVGELKIKLRGIRKQFRKQNRHSPIEFVTGRVKSVESIQEKMVLRGISEENLAQDLQDIAGLRIMVQFVDDVDEVLALLRKRHDMTVVQERDYITHMKSSGYRSYHVVVEYPVDTIDGQKKVLAEIQIRTLAMNFWATIEHSLNYKYQGDFPEEIKQRLEKTAKIALELDEEMRKIREDIREAQLLFDPLNRKLSDGVGNSDDTDEFYR
3L9D Chain:A ((1-199))
--MNWEEFLDPYIQAVGELKIKFRGIRKQFRKQKRHSPIEFVTGRVKPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQFVDDVNDVLELLRQRKDMKVIQERDYINN-KPSGYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHGEFPEDIKRRLELTSKIAFQLDEEMRQIRDDIKEAQLLF----------------------
General information:
TITO was launched using:
RESULT:
Template:
3L9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82146 for 1410 contacts (-58.3/contact) +
2D Compatibility (PS) -21336 + (NN) -9334 + (LL) 496
1D Compatibility (HY) -29200 + (ID) 7950
Total energy: -149470.0 ( -106.01 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3L9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L9D-query.scw
PDB file :
Tito_Scwrl_3L9D.pdb
: