Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNLNLLMKPKTSSKQKKEKTKKREVLPTTLNTLAYQGLFPNGLMQVSPDYFSQSYLLGDVNYQTVGLEEKEAIVEKYSNLINSLDDKTNFQLTIFNKKVNLEQFRKSVLYPLQEDGFDSYREELNRMMDSNLEAGENNFSAVKLISFGKSDQAPKLAYRSLSQIGEYFKSGLSEIEASFTLLTGEERVNNLADMLRGENHLPFTYKDLVLSGQTTKHFIAPTSISFKHKNHIEIDNRLLQIVYVRDYGMELGDKFIRELMQSDLEVVISLHAKGSTKSEAMKKLRTKKTLMESQKIGEQQKMARSGIYLDKVGHALESNIDEAEDLLKTMTQTGDKLFDTVFLIGFFADNEEQLKQSLDIIKQVAGSNDLIIDNLTYMQEAALNSLLPFGKNCLEGVSRSLLTSNIAVNSPWTSVDLQDAGGKFYGINQISSNIITID---RGKLNTPSGL-ILGTSGSGKGMATKHEIISTKLKEADKDTEIIIVDPENEYSVSGQAFGGEIID-------IAPDSRTFLNVLDLSDDNLDEDPVKVKSEFLLSWIGKLLDRKMDGREKSIIDRVTRLTYKHF-----EEPSLV---EWVFV----------LSQQPEQEARDLALDMELYVEGSLD-IFSHKTTIQTDSHFLIYNVKKLG---DELKQIALMVIFDQIWNRVVKNQKLGKKTWIYFDEMQLLLLDQF--ASDFFFKLWSRVRKYGATPTGITQNVETLL---LDANGRRIIANSEFMILLKQAKSDREELVHMLGLSKELEKYLVNPEKGAGLIKAGSTVVPFRNKIPHQTKLFDIMSTDPDKMRT |
4AG5 Chain:A ((3-370)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGINDGSGIVLGKDR-DGGLVLVDIWKRGGDRTNSNWTILAKPGAGKSFTAKMLL----LREYMQGSRVIIIDPEREYKEMCRKLGGVWINCTGGEGKINPLQVRLR---------VFQSPLALHIQTLRTFFSLYL-RDLTDTEKAALEDALVEVYKEAGITWDTDPRGVPNDKWPTVKELYEYCVKKAEENPETYGR-LSVLLKRAAEGADSYLWAGPTAVEADSDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRR--ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQGEKDLEAITTLMNLSEAEHDLLVNAKRGEGLFVAGTQRIHIKIEAAPYEMQY------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4AG5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -134734 for 2554 contacts (-52.8/contact) +
2D Compatibility (PS) -34307 + (NN) -18027 + (LL) 29124
1D Compatibility (HY) -21600 + (ID) 4450
Total energy: -183994.0 ( -72.04 by residue)
QMean score : 0.429
|
|
|