Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVALIPEKCIACGLCQTY-SNIFDYQDDGIVKFSDTDNLEKEVPNSDQDTVLAVKSCPTKALTIL
1VJW Chain:A ((1-58))
MKVRVDADACIGCGVCENLCPDVFQLGDDGKAKVLQP---ETDLPCAKD----AADSCPTGAISVE
General information:
TITO was launched using:
RESULT:
Template:
1VJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39920 for 406 contacts (-98.3/contact) +
2D Compatibility (PS) -6004 + (NN) -1532 + (LL) 364
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -53342.0 ( -131.38 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1VJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJW-query.scw
PDB file :
Tito_Scwrl_1VJW.pdb
: