Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVRLAFPNEIDQIMLLIEEARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIEDGMLATYAAVIDGHEEVYDAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIEGHKGPDFRCDTHEKNVTMQHILNKLGYQYCGKVPLDGVRLAYQKIKEKGETSIYREIDERNPM
2PC1 Chain:A ((21-186))
-QIRLAFPNEIDQIMLLIEEARAEIAKTGSDQWQKEDGYPNRNDIIDDILNGYAWVGIEDGMLATYAAVIDGHEEVYDAIYEGKWLHDNHRYLTFHRIAISNQFRGRGLAQTFLQGLIEGHKGPDFRCDTHEKNVTMQHILNKLGYQYCGKVPLDGVRLAYQKIKEK---------------
General information:
TITO was launched using:
RESULT:
Template:
2PC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94384 for 1256 contacts (-75.1/contact) +
2D Compatibility (PS) -18470 + (NN) -10335 + (LL) 984
1D Compatibility (HY) -23200 + (ID) 8250
Total energy: -153655.0 ( -122.34 by residue)
QMean score : 0.467
(partial model without unconserved sides chains):
PDB file :
Tito_2PC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PC1-query.scw
PDB file :
Tito_Scwrl_2PC1.pdb
: