Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRCPKCGYNKSSVVDSRQAEEGTTIRRRRECEKCGNRFTTFERLEELPLLVIKKDGTREQFSRDKILNGIIQSAQKRPVSSEDIENC---ILRIERKIRSEYEDEVSSITIGNLVMDELAELDEITYVRFASVYKSFKDVDEIEELLQQITKRVRSKKSGSV |
4O2I Chain:A ((35-85)) | ---------------------------------------------------------------------VLDIGKRIPLSAEDLGNLYENVIRAVRDSRSKLIDQHTVDMIGNTILDALSRSQTFRDAVSYGIHNKEVHIGCIKYRNEYELNGESPVKVDDI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4O2I.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6004 for 218 contacts (-27.5/contact) +
2D Compatibility (PS) -4694 + (NN) 577 + (LL) 4128
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -9543.0 ( -43.78 by residue)
QMean score : 0.506
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