Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQLDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVSFLASKAQPIYPKTIETYNAYIPYLD
2OGI Chain:A ((4-196))
--YKDYTGLDRTELLSKVRHMMSDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKWGNNIWHGLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQMSTLDKIVYVADYIEHNRDFPGVEEARELAKVDLNKAVAYETARTVAFLASKAQPIYPKTIETYNAYIPYLD
General information:
TITO was launched using:
RESULT:
Template:
2OGI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97312 for 1570 contacts (-62.0/contact) +
2D Compatibility (PS) -20780 + (NN) -10704 + (LL) 260
1D Compatibility (HY) -26400 + (ID) 9550
Total energy: -164486.0 ( -104.77 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_2OGI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OGI-query.scw
PDB file :
Tito_Scwrl_2OGI.pdb
: