Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKETRHQLIRSLVSETKVRTQHELRELLEKNGVSVTQATLSRDMKELNLIKVNESSDNATETYYEIHSISQKRWE--ERLRFYMEDALVMLFPVQNQIVLKTLPGLAQSFGSILDSILLPEILATVCGDDTCLIICNNSEEAQKCFEKLSQYTPPFFFSKK
1F9N Chain:A ((3-145))
--KGQ-RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKV--PTNNGS---YKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTILIICRTPEDTEGVKNRLLELL--------
General information:
TITO was launched using:
RESULT:
Template:
1F9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80869 for 950 contacts (-85.1/contact) +
2D Compatibility (PS) -15808 + (NN) -7527 + (LL) 672
1D Compatibility (HY) -13200 + (ID) 2800
Total energy: -119532.0 ( -125.82 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1F9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9N-query.scw
PDB file :
Tito_Scwrl_1F9N.pdb
: