Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIYIND-HYG------LWQADIKNIQQECTNERSKDIITKIAPVDADYFLIKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
3EEF Chain:A ((4-150))
------ALVVVDMVN--EFIHGRLATPEAMKTVGPARKVIETFRRSGLPVVYVNDSHYPDDPEIRIWG------RHSMKGDDGSEVIDEIRPSAGDYVLEKHAYSGFYGTNLDMILRANGIDTVVLIGLDADICVRHTAADALYRNYRIIVVEDAVAARID---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3EEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110059 for 1127 contacts (-97.7/contact) +
2D Compatibility (PS) -14860 + (NN) -5701 + (LL) 3844
1D Compatibility (HY) -12800 + (ID) 2350
Total energy: -141926.0 ( -125.93 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_3EEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EEF-query.scw
PDB file :
Tito_Scwrl_3EEF.pdb
: