Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNTPLYKALIQHARRNSHSFHVPGHHNG--------DVFFDD--AKSIFDPLLTIDVTELAGLDDLHHPSGVIKEAQELASQLYGSAESFFLVNGTTVGNLAMILSVCEPGDTILVQRNCHKSVFHAVDLSGAEPVYLAPDVDSAMHV----PTHVPLGTIKEALEAYP---DAKG-----LVLTNPTYYG------HSADLTEIITEAHH-----YGI----PVLVDEAHGAHFIL-GEPFPVSALKMGADIVVQSAHKTLPAMTMGSYLHLNSS-CRINRDRVAEYLNRLQSSSPSYPIMASLDIARAYV---------QHIIEEQKLSDILQRIETLKQTFDSLTNAEAVNPANPLIITDPLKLTIRSKRGHSGYTLQSILERANIFTELADENQVLLVLPLGGKRRINAEIIRSIDEEIEKTPPDQTFVSAEWGVQPVTVLPYPKKVLHSFKKEYVSFEEAAGRLNAEDIIPYPPGIPMIMAGERITKESVQKLSRLISMKTHVQGNMKIKEKQLLVYIEEEKS |
| 2VYC Chain:A ((141-487)) | ---PLFSALMKYSDIHEYSWAAPGHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSL--LDH-TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYAD-----HYAMRGEPGDHNGPTVFA---THSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEVIDEA--VDFRQAMARLYKEF-TADGSWFFKPWNKEVVTDP-------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VYC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142820 for 2189 contacts (-65.2/contact) +
2D Compatibility (PS) -32162 + (NN) -9894 + (LL) 13116
1D Compatibility (HY) -17200 + (ID) 4850
Total energy: -193810.0 ( -88.54 by residue)
QMean score : 0.349
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