Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEVEHKAVETAAGFLARQMEQ
2W1T Chain:B ((5-177))
----GIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEVEHKAVETAAGFLARQME-
General information:
TITO was launched using:
RESULT:
Template:
2W1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105557 for 1265 contacts (-83.4/contact) +
2D Compatibility (PS) -19031 + (NN) -8672 + (LL) 588
1D Compatibility (HY) -24400 + (ID) 8650
Total energy: -165722.0 ( -131.01 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2W1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W1T-query.scw
PDB file :
Tito_Scwrl_2W1T.pdb
: