Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFSRERTITEIQNDYKEQVERQNQLKKRRRKGLYRRLTVFGALVFLTAIVLASSVWSQTSSLSAKEEKKEQLEKELKSLKTKQTDLKEEISKLKDEDYVTELARRDLFMSGDGEIIFNVEKKSK
4LNV Chain:A ((879-937))
----------------------QNQMRYRQTDGSFGVWEKSGSSVFLTAFVATS---MQTASKYMNDIDAAMVEKALDWLASKQ-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LNV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14870 for 357 contacts (41.7/contact) +
2D Compatibility (PS) -6101 + (NN) -2310 + (LL) 5044
1D Compatibility (HY) -2000 + (ID) 1100
Total energy: 8403.0 ( 23.54 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_4LNV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LNV-query.scw
PDB file :
Tito_Scwrl_4LNV.pdb
: