Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINV-EKDGKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
2K4K Chain:A ((5-94))
--FEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQAAPEKKESKPRKPK-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2K4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46165 for 587 contacts (-78.6/contact) +
2D Compatibility (PS) -9456 + (NN) -2462 + (LL) 1692
1D Compatibility (HY) -10000 + (ID) 2300
Total energy: -68691.0 ( -117.02 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2K4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K4K-query.scw
PDB file :
Tito_Scwrl_2K4K.pdb
: