Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTA---KFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKI-QQGWFDFDVIVATPDMMGEVGKIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
3QOY Chain:A ((1-229))
MARRGKKYIEASKLVDRNKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKGQYIKNMAVSLTMSPSVKLD-------
General information:
TITO was launched using:
RESULT:
Template:
3QOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106530 for 1779 contacts (-59.9/contact) +
2D Compatibility (PS) -24373 + (NN) -12985 + (LL) 304
1D Compatibility (HY) -23600 + (ID) 6750
Total energy: -173934.0 ( -97.77 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_3QOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QOY-query.scw
PDB file :
Tito_Scwrl_3QOY.pdb
: