Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQLREA---NVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTE-DVVAPAKVLNDFAKNHEA--LEIKAGVIEGKVSTVEEVKALAELPSREGLLSMLLSVLQAPV-----------RNLALAAKAVAEQKEEQGA
1ZAV Chain:A ((5-177))
-----QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGARFRVVKNTLLNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGILRNLVYVLNAIKEKK-----
General information:
TITO was launched using:
RESULT:
Template:
1ZAV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56776 for 1044 contacts (-54.4/contact) +
2D Compatibility (PS) -17164 + (NN) -9163 + (LL) 800
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -100153.0 ( -95.93 by residue)
QMean score : 0.711
(partial model without unconserved sides chains):
PDB file :
Tito_1ZAV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZAV-query.scw
PDB file :
Tito_Scwrl_1ZAV.pdb
: