Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLKCTISYDGHLFNGYQVQP-GKRTVQDELEKALAVLHKSKDRIPVVSSGRTDSGVHAAGQVIHFDTPLSIPAERWPYALNALLPDDIAVKQA-EIADDGFHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFCAAKTEVQDKVRTIYE--LDWTETADGLQMRI--TGSGFLYNMVRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAGRTAPGHGLYLWNVYYDN |
1VS3 Chain:A ((3-248)) | -RLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGALPK---AVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPD-FHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGF--AKEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAHGLYFVEAAYPE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VS3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -113330 for 1919 contacts (-59.1/contact) +
2D Compatibility (PS) -25571 + (NN) -8176 + (LL) 400
1D Compatibility (HY) -16800 + (ID) 5300
Total energy: -168777.0 ( -87.95 by residue)
QMean score : 0.402
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