Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFAKTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETLSSPLYKKQFEDELKKAAKDTAKESE
4O8W Chain:A ((69-176))
---------------------------------------------------------------------AVKETLQQMLTSDQGKKFWESALKDPKFAESFAKGLQAEHEKMMRALMKDPDYQALMIDILKDPEMEKAMVDVLKSKEFRQHLQKVITETLNSPLYQAKIQDMLMKAA--------
General information:
TITO was launched using:
RESULT:
Template:
4O8W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5585 for 476 contacts (-11.7/contact) +
2D Compatibility (PS) -11298 + (NN) -3496 + (LL) 5880
1D Compatibility (HY) -11600 + (ID) 2700
Total energy: -28799.0 ( -60.50 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4O8W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O8W-query.scw
PDB file :
Tito_Scwrl_4O8W.pdb
: