Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSLIHFDPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGITRNYLASPSIMGVSDGSAFIITLCMVLLPQSSSIEMMIYSFIGSALGAVLVFGLAAMM--PNGFTPVQLAIIGTVTSMLLSSLSAAMSIYFQISQDLS---FWYSARLHQMSPDFLKLAAPFFLIGIIMAIS-LSKKVTAVSLGDDISKSLGQKKKTIKIMAMLSVIILTGSAVALAGKIAFVGLVVPHITRFLVGSDYSRLIPCSCILGGIFLTLCDLASRFINYPFETPIEVVTSIIGVPFFLYLIKRKGGEQNG |
| 4R9U Chain:A ((59-331)) | ------------------------------------------------------VWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAG-VGLIAAVLLGQG---QLPNWALGLSAIAGALIITLILLRFARRHLSTSRLLLAGVALGIISSAL-MTWAIYFSTSVDLRQLMYWMMGGFGGV--DWRQSWLMLALIPVLLWISSQSRPMNMLALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLSGLTDHRVLLPGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKA------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250909 for 2221 contacts (-113.0/contact) +
2D Compatibility (PS) -26935 + (NN) 428 + (LL) 4080
1D Compatibility (HY) -20800 + (ID) 4300
Total energy: -298436.0 ( -134.37 by residue)
QMean score : 0.364
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