Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATGGLAIIQSMKHKLPPSERKL---ADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGLKGFQDLKMRVAGDLAKPTFQGYRDIVPHEPLPSISEKTAGNAIQAIQDTSDLMDYKELERAVSLLLKAHTVHFIGLGASGIVAKDAQQKWLRIHKQATAFTDTHLVASLIANADKDDIVFAISFSGETQEIVELFAMAKEKGITTISLTQFSQTSVSALADVPLYTAHSNEALIRSAATSSRLAQLFIIDVLFLGMAAEQYETTTGYIDKTRAAIQSMRIK
4IVN Chain:A ((11-250))
-----------LRSNMEPFSKKLRVVADYILENAHDVQFQTITDLARNTQTSEATVVRLCRDMGYKGYSDFRMALAVDLSQT---------G-----DICDVSAQSAVDSLQDTAKLIDRKSLARIVERVHQAEFIGCIGVGASSIVGRYLAYRLIRIGKKAIMFEDTHLAAMSASRSSQGDLWFAVSSSGSTKEVIHAAGLAYKRDIPVVSLTNINHSPLSSLSTEMLVAARP-EGPLTGGAFASKVGALLLVDVL-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4IVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140110 for 1885 contacts (-74.3/contact) +
2D Compatibility (PS) -24989 + (NN) -14883 + (LL) 4120
1D Compatibility (HY) -19200 + (ID) 3900
Total energy: -198962.0 ( -105.55 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_4IVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IVN-query.scw
PDB file :
Tito_Scwrl_4IVN.pdb
: