Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKSKGSIESEISK---SITQWEKDYLGRGSVSVKT---DILRDMIIVNLKGILTPAEYVVCGSK-EGMLSIKQTRSELVESGIEGLKDIILKITGEKVKSFHTDLSSRTGERVMVFKLCNDLEKNLEKIL
3OBW Chain:A ((195-317))
-----GFFKEEVSKKVNAILKNKKIYIDSVSSATRAGLHEVLKRDII---DKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVI
General information:
TITO was launched using:
RESULT:
Template:
3OBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2779 for 593 contacts (-4.7/contact) +
2D Compatibility (PS) -11655 + (NN) 341 + (LL) 660
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -21833.0 ( -36.82 by residue)
QMean score : 0.126
(partial model without unconserved sides chains):
PDB file :
Tito_3OBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OBW-query.scw
PDB file :
Tito_Scwrl_3OBW.pdb
: