Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPIEVFKALSNESRLQILQWLKEPDRHFAPHEGIDMNTIGVCVSQITDKLKMTQSTASQYLTILLRAGLIKAERIGKYTYYKRDEEAIGKLADFLKTEI
2KKO Chain:A ((18-89))
-----VGKALANGRRLQILDLLAQGER---------------AVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARL--------
General information:
TITO was launched using:
RESULT:
Template:
2KKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44355 for 497 contacts (-89.2/contact) +
2D Compatibility (PS) -7450 + (NN) 1094 + (LL) 1968
1D Compatibility (HY) -4000 + (ID) 1450
Total energy: -54193.0 ( -109.04 by residue)
QMean score : 0.564
(partial model without unconserved sides chains):
PDB file :
Tito_2KKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KKO-query.scw
PDB file :
Tito_Scwrl_2KKO.pdb
: