Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSNGDKLSLSVQNLANTNEITIVQAIGELKKSGKD-AIPVLVEALKEEGSLCNIAAA-VLGEFGEDASEAAEELSCLLKSHAEDTRMAAAISLMRIG-KPSLPFVIKIAQESEGQSCFWASWCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED
4XVP Chain:D ((11-146))
--TDPEKVEMYIKNLQDDSMRVRYNAATALGKIGDERAVEPLIKALKDEDGYVRLEAAEALGEIGDE--RAVEPLIKALKDEDPDVRSEAALALGKIGDERAVEPLIKALKDEDRYVRMAAAWALGKIGGERVRAAMEKL----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4XVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73437 for 1087 contacts (-67.6/contact) +
2D Compatibility (PS) -14380 + (NN) -8881 + (LL) 2804
1D Compatibility (HY) -5200 + (ID) 1900
Total energy: -100994.0 ( -92.91 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_4XVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XVP-query.scw
PDB file :
Tito_Scwrl_4XVP.pdb
: