Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDEQMLTEWPSHLPWLNQSQN---DFTFPSDTYLLLYFWSMSCPNCHQLTDKVL---QDIKDMNVKVIGVHVPYIEEEKSMEVVLTYALDRGLAIPIVLDQNYEIVTTCHVQGIPSFCLLSQYGQIITKTMGDVGWDKMLKKIAGL
2HYX Chain:A ((409-520))
---------------WLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTV--------------------
General information:
TITO was launched using:
RESULT:
Template:
2HYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97850 for 714 contacts (-137.0/contact) +
2D Compatibility (PS) -11306 + (NN) -5342 + (LL) 2388
1D Compatibility (HY) -6800 + (ID) 1850
Total energy: -120760.0 ( -169.13 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_2HYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HYX-query.scw
PDB file :
Tito_Scwrl_2HYX.pdb
: